Solvent Effects and pH Dependence of the X-ray Absorption Spectra of Proline from Electrostatic Embedding Quantum Mechanics/Molecular Mechanics and Mixed-Reference Spin-Flip Time-dependent Density-Functional Theory

  • Alias-Rodriguez, Marc; 
  • Bonfrate, Simone; 
  • Park, Woojin; 
  • Ferre, Nicolas; 
  • Choi, Cheol Ho; 
  • 외 1명
Citations

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8
Citations

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초록

The accurate description of solvent effects on X-ray absorption spectra (XAS) is fundamental for comparing the simulated spectra with experiments in solution. Currently, few protocols exist that can efficiently reproduce the effects of the solute/solvent interactions on XAS. Here, we develop an efficient and accurate theoretical protocol for simulating the solvent effects on XAS. The protocol combines electrostatic embedding QM/MM based on electrostatic potential fitted operators for describing the solute/solvent interactions and mixed-reference spin-flip time-dependent density functional theory (MRSF-TDDFT) for simulating accurate XAS spectra. To demonstrate the capabilities of our protocol, we compute the X-ray absorption of neutral proline in the gas phase and ionic proline in water in all relevant K-edges, showing excellent agreement with experiments. We show that states represented by core to pi* transitions are almost unaffected by the interaction with water, whereas the core to sigma* transitions are more impacted by the fluctuation of proline structure and the electrostatic interaction with the solvent. Finally, we reconstruct the pH-dependent XAS of proline in solution, determining that the N K-edge can be used to distinguish its three protonation states.

키워드

ELECTRONIC-STRUCTURE; AMINO-ACIDS; SPECTROSCOPY; HYDRATION
제목
Solvent Effects and pH Dependence of the X-ray Absorption Spectra of Proline from Electrostatic Embedding Quantum Mechanics/Molecular Mechanics and Mixed-Reference Spin-Flip Time-dependent Density-Functional Theory
저자
Alias-Rodriguez, Marc; Bonfrate, Simone; Park, Woojin; Ferre, Nicolas; Choi, Cheol Ho; Huix-Rotllant, Miquel
DOI
10.1021/acs.jpca.3c05070
발행일
2023-11-29
유형
Article
저널명
Journal of Physical Chemistry A
권
127
호
49
페이지
10382 ~ 10392